[spoon]

Though you can't sort by facility type, you can sort colonies by whether or not they have a spaceyard in the Construction Queue window (F7 (or click the wrench icon)).

Go to the Construction Queue window, and it will show all your colonies. The ones with a spaceyard will have a crane icon by them. If you want, you can click the radio boxes to the right to (for example) sort out spaceyard-ships and planets without spaceyards.

I find it a lot easier to do most of my construction orders from this window...