The AI, in all its silliness, puts the starting facilities according to a very strict scheme. Here they are according to Fyron's modding guide:
Quote:
1) The Last facility with the Spaceport ability in the file.
2) The Last facility with the Space Yard ability in the file.
3) The Last facility with the Resupply ability in the file.
4) One facility that has the highest level of the Resource Generation - Organics ability.
5) One facility that has the highest level of the Resource Generation - Radioactives ability.
6) One facility that has the highest level of the Resource Generation - Minerals ability.
7) One facility that has the highest level of the Point Generation - Research ability.
8) Repeat 6 & 7 until the planet is filled.
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So, if the AI happens to be putting "bad" facilities, you will want to make a "good" facility with a slightly higher value, even one more point. The same goes true for the cultural centers, you may need to add an improvement for the high tech starts depending on the other facilities available. (At least it is how it is solved in Adamant for example) I could be wrong about the "how to solve it" though, as I didn't delve much into the facilities yet.