[PlasmaKrab]

So you installed the Cold War mod over the v2.51 and then upgraded the game right over it?
Or have you uninstalled the mod before installing the V3, using the CWM_RC0.1_restoredefaults.exe file?
This exe is designed to replace all the modified flag files (plus names, ranks, picklists etc.) with the original v2.5 ones.
Tell me if you have run it and you have still problems with the flags, that means a bug in the mod.

If you haven't run it prior to installing the V3 patch, the flag files are battle.shp, icon0095.shp, and icon0097.shp.
Run the uninstaller above or manually overwrite these files with backup versions.

Warning! backup the picklist files "PK012000.DAT", "PK012001.DAT", "PK012002.DAT" before running the RC0.1 uninstaller over the V3 game!
Better yet, run the uninstaller in a new folder and then copy only the .shp files into your game directory.

I'll post an updated V3-friendly version of the mod soon.