Hi Wraithlord,
1. Yep, server is updated, so go ahead and update yourself. Well, unless you are also in some network MP games, in which case you should probably keep an un-patched copy until your host for those games has also patched.
2. Just check the website,
www.llamaserver.net . It's updating properly now.
3. It's not a glitch, it hosted because all the 2h files were received.