Geez.
Somehow when I restarted the server (because of the map change) I managed to cut and paste --scoredump into the command line. So even though --noscoregraphs is on, the web status page script pulled in all the scores out of the game directory.
I've removed --scoredump from the command line so it is now,
Code:
/usr/local/bin/dom308 -T -S --port 8098 --noclientstart -q --uploadmaxp 11 --noscoregraphs --mapfile Whyte.map --renaming --masterpass ******** --era 2 -s Whyte
I have deleted all scores info for the game off the server. Sorry about that!