Turbocharged AI vs Humanities Last Hope - Running

[endomorphious]

I'm running a legit copy of Dom 3 I bought direct from Shrapnel and it runs flawlessly except for this mods issue. The contents are in the "mods" folder but the game simply isn't seeing them there. I don't use a short cut with this game i load from the programs menu but I checked that path and it reads correctly (I believe..."C:\Program Files\dominions3\dom3.exe"). There aren't any other copies of the game on the computer and its a full install.