I sincerely hope that Aaron does do one more patch for SeIV and fixes this ability.
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Creator of the Star Trek Mod - AST Mod - 78 Ship Sets - Conquest Mod - Atrocities Star Wars Mod - Galaxy Reborn Mod - and Subterfuge Mod.
The lower bad intel event chance does not work well. What I think it does is make the system the facility is in less likely do be chosen randomly when you do a mission with a random target. It certainly has 0 effect on targeted missions against objects in that system (of any sort). That I have tested.